The following files are part of example workflows for the methylscaper R package and Shiny App.


Single-cell example data:

For the Preprocessing tab:
• Click here to download data from GSE109262
• Download three cells from the GSE109262 data:
  Endogenous Methylation
  • ESC_A08-met
  • ESC_A07-met
  • ESC_A03-met
  Accessibility
  • ESC_A08-acc
  • ESC_A07-acc
  • ESC_A03-acc
  
  For the Visualization tab:
• Single Cell RDS (Mouse data)

For the Preprocessing tab:
• Sequences FASTA
• Reference FASTA

For the Visualization tab:

• Single Molecule RDS